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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20535534_20536238_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20535534 - 20536238
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTGCTTACTG
Flanking Amino Acid:
LRVSEPKVPKVPRNPDLPNA
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
68.2
0.41
0.9
65.6
34.7
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
58.4
0.13
2.1
70.75
43.1

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747