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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20536350_20537560_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20536350 - 20537560
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TGTTCTTCAATT
Flanking Amino Acid:
EGEDYREKQKLSMMEWIEPP
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.7
0.47
1
65.9
40.3
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
71.3
0.75
1.5
84.97
35.6

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747