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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20540875_20541263_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20540875 - 20541263
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATGTATTAATG
Flanking Amino Acid:
DGQTPHEEREEAIDTFNAPN
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.9
0.74
0.7
81.2
30.9
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
49.3
-0.1
1.7
53.99
41.2

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747