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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20541386_20541928_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20541386 - 20541928
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AAATCAACAACA
Flanking Amino Acid:
DKLLAKLREQGSRVLLFSQM
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
74.5
0.55
1
73.5
41.8
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
46.1
-0.3
2
59.41
39

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747