Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20542988_20543727_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20542988 - 20543727

Intron Length:

740

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTAAT

5'SS Class:

major

3'SS Sequence:

TCAATTTTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATGTTTGAAAA

Flanking Amino Acid:

DQKLVERLHAVLKPFLLRRI

Intron Amino Acid Position:

367

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

80.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

77.7

0.62

0.9

73.2

36.9

Minor 5ss

40.3

-1.1

2.9

61.3

Minor BPS

49.8

-0

1.6

62.1

37.9

Associated Gene:

Gene:

SMARCA1

Ensembl Gene ID:

ENSAPLG00000013149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022075

20526581 - 20555327

28747

ENSAPLT00000013756

20526581 - 20555327

28747

ENSAPLT00000024184

20526581 - 20555327

28747