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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20543797_20544531_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20543797 - 20544531
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
CTGGTCATACTT
Flanking Amino Acid:
LLPDVFNSADDFDSWFDTKN
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
44.3
-0.3
1.9
59.28
45

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747