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Intron Name: Anas_platyrhynchos_platyrhynchos_10_20544664_20544894_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20544664 - 20544894

Intron Length:

231

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

GTTGTATTCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

GTGATGATAACT

Flanking Amino Acid:

AHRIKNEKSKLSEIVREFKT

Intron Amino Acid Position:

300

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

70.9

0.47

0.9

62.6

43.3

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

45.4

-0.2

2.3

44.3

Associated Gene:

Gene:

SMARCA1

Ensembl Gene ID:

ENSAPLG00000013149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022075

20526581 - 20555327

28747

ENSAPLT00000013756

20526581 - 20555327

28747

ENSAPLT00000024184

20526581 - 20555327

28747