About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20545051_20547546_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20545051 - 20547546
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGTTATTAATT
Flanking Amino Acid:
GVNGILADEMAAFIRDVMMP
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.2
0.48
0.9
65.7
36
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
65.6
0.57
1.5
79.01
37.3

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022075
20526581 - 20555327
28747