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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20552384_20555222_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20552384 - 20555222
Intron Length:
2839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCGCTG
5'SS Class:
major
3'SS Sequence:
ATTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATA
Flanking Amino Acid:
SGAQEPGSEEKNDPPFQLKP
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
76.3
0.59
1
71.7
42.4
Minor 5ss
38.8
-1.3
3.6
55.9
48.3
Minor BPS
64.4
0.45
1.4
70.02
36

Associated Gene:

Gene:
SMARCA1
Ensembl Gene ID:
ENSAPLG00000013149
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024184
20526581 - 20555327
28747
ENSAPLT00000022075
20526581 - 20555327
28747
ENSAPLT00000013756
20526581 - 20555327
28747