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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20612908_20614366_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20612908 - 20614366
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTCGC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GCTTCCTTAACC
Flanking Amino Acid:
AAVTRMWTVPYNRMSFISPE
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
62.6
42.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
87.4
0.84
0.6
84.3
23.8
Minor 5ss
36.4
-1.5
2.9
46.4
36.9
Minor BPS
84.8
1.08
1.1
83.37
36.3

Associated Gene:

Gene:
GAB3
Ensembl Gene ID:
ENSAPLG00000013810
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045783
20564432 - 20616812
52381
ENSAPLT00000032780
20579015 - 20617314
38300
ENSAPLT00000014427
20600692 - 20616812
16121