About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20615763_20616695_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20615763 - 20616695
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTCTCTCACA
Flanking Amino Acid:
NSASPSPVQKKPFLSEEQRV
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.1
33.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.5
0.71
0.8
76.3
32.3
Minor 5ss
41.1
-1
3.4
58.5
46.3
Minor BPS
53.2
0.09
2.1
71.56
40.9

Associated Gene:

Gene:
GAB3
Ensembl Gene ID:
ENSAPLG00000013810
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014427
20600692 - 20616812
16121
ENSAPLT00000045783
20564432 - 20616812
52381
ENSAPLT00000032780
20579015 - 20617314
38300