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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20634596_20640546_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20634596 - 20640546
Intron Length:
5951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
TTTTTTAATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTTTTTTAATT
Flanking Amino Acid:
GAQNKRVLIIDLIQCTNEMN
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
70.1
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.9
0.74
0.8
83.1
32.2
Minor 5ss
27.2
-2.6
2.9
28.8
37
Minor BPS
78.6
0.98
1
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024300
20634451 - 20659550
25100