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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20641843_20642646_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20641843 - 20642646
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ATATTCTTAACT
Flanking Amino Acid:
NNYLDKSAMQGYDMSTFIRR
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
76.5
0.6
0.8
69.9
35.3
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
83.9
1.14
1
91.17
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000047123
20633732 - 20659583
25852
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000036732
20633732 - 20659583
25852