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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20644441_20644978_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20644441 - 20644978
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAAACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAACC
Flanking Amino Acid:
KLSEFLKVAEQVGIDQGDIP
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
80.3
34.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
68.7
0.42
1
60.2
44.2
Minor 5ss
40.4
-1.1
3.1
56.9
47.4
Minor BPS
56.6
0.19
2.3
77.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000047123
20633732 - 20659583
25852
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000036732
20633732 - 20659583
25852
ENSAPLT00000035610
20633732 - 20659510
25779