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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20652411_20652667_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20652411 - 20652667
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TAGATCTTCATT
Flanking Amino Acid:
LFAVPAPTTNSMPNLSSDLF
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.6
0.78
0.8
81.6
35
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
52.1
0.15
1.8
69.11
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000036732
20633732 - 20659583
25852
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000047123
20633732 - 20659583
25852