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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20653783_20654233_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20653783 - 20654233
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAAAAC
5'SS Class:
major
3'SS Sequence:
CTCTTTCACAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CTCTCTTTCACA
Flanking Amino Acid:
SSKHTVELFSDDFSGHKSAY
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
70.2
33.7
Major BPS
75.1
0.62
1
65.6
41
Major PPT
65.2
0.34
1
66.9
32.2
Minor 5ss
33.3
-1.9
3
40.2
40.1
Minor BPS
62.1
0.37
1.8
70.26
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000014738
20633732 - 20659550
25819