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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20654294_20654386_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20654294 - 20654386
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTGC
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTACCCTAAATT
Flanking Amino Acid:
ASVYHPLPVDGFPLHSAPPS
Intron Amino Acid Position:
489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
65.8
41
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
46.2
-0.4
2.6
58.8
40.9
Minor BPS
67.2
0.62
1.7
82.42
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000036732
20633732 - 20659583
25852