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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20654498_20655353_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20654498 - 20655353
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAAACT
5'SS Class:
major
3'SS Sequence:
TTTAACATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAGCTTTTAACA
Flanking Amino Acid:
STAPEYRTASDDVLQPTVPL
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
73.2
35.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.9
0.52
0.9
63.8
42.3
Minor 5ss
35.6
-1.6
3.1
47.4
42.2
Minor BPS
66.9
0.53
1.2
69.39
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000036732
20633732 - 20659583
25852
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000047123
20633732 - 20659583
25852
ENSAPLT00000024300
20634451 - 20659550
25100