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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20656396_20658311_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20656396 - 20658311
Intron Length:
1916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
TTTGCTGTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CTGTCCTTACTC
Flanking Amino Acid:
PTPLPTMPHMNGVHYPGYVP
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
71.8
0.49
1.1
65.4
45.5
Minor 5ss
43
-0.8
2.8
56.8
42.6
Minor BPS
64.3
0.43
1.7
69.56
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014738
20633732 - 20659550
25819