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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20656396_20658448_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20656396 - 20658448
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTCT
5'SS Class:
major
3'SS Sequence:
TTCTTGATCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTTCTTGATC
Flanking Amino Acid:
PTPLPTMPHMVPAPITYPVT
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
66.9
0.38
1.1
68
36.6
Minor 5ss
43
-0.8
2.8
56.8
42.6
Minor BPS
75.4
0.78
1
79.18
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000047123
20633732 - 20659583
25852
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000036732
20633732 - 20659583
25852