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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20658336_20658448_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20658336 - 20658448
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTTCTTGATC
Flanking Amino Acid:
HMNGVHYPGYVPAPITYPVT
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.6
37
Major BPS
79
0.72
1
78.4
31.2
Major PPT
66.9
0.38
1.1
68
36.6
Minor 5ss
36.9
-1.5
2.9
47.3
41.1
Minor BPS
75.4
0.78
1
79.18
29.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014738
20633732 - 20659550
25819