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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20658951_20659495_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20658951 - 20659495
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTGT
5'SS Class:
major
3'SS Sequence:
CCCTGTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GTGGCATTAACA
Flanking Amino Acid:
NPFAPVSGTQIQFM*
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
68.2
39.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.4
0.59
0.8
70.5
33.7
Minor 5ss
39.5
-1.2
3.2
55.9
48.3
Minor BPS
60.8
0.34
1.8
69.37
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014048
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035610
20633732 - 20659510
25779
ENSAPLT00000024300
20634451 - 20659550
25100
ENSAPLT00000047123
20633732 - 20659583
25852
ENSAPLT00000014738
20633732 - 20659550
25819
ENSAPLT00000039358
20633732 - 20663886
30155
ENSAPLT00000036732
20633732 - 20659583
25852