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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20665963_20666999_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20665963 - 20666999
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTAATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTGTTGTTAATT
Flanking Amino Acid:
LELNLAQKKRRLKSQIPEIK
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76
0.59
0.9
69.2
40.6
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
57.2
0.31
2.1
74.52
43.3

Associated Gene:

Gene:
VBP1
Ensembl Gene ID:
ENSAPLG00000014527
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015141
20665113 - 20670081
4969