About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20667622_20669352_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20667622 - 20669352
Intron Length:
1731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTATACAAATCT
Flanking Amino Acid:
PTDKVCLWLGANVMLEYDID
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
44.9
-0.3
2.2
71.03
45.2

Associated Gene:

Gene:
VBP1
Ensembl Gene ID:
ENSAPLG00000014527
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015141
20665113 - 20670081
4969