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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20669492_20670010_F

Intron Information:

Intron Rank:
5
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
20669492 - 20670010
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
TCCACACCCTCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
GTTTCCTTAATT
Flanking Amino Acid:
LRDQFTTTEVNMARVYNWDV
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.9
-0
1.2
50.8
41.3
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
66.7
0.38
0.9
62.3
33.4
Minor 5ss
92.7
1.44
0.8
90
21.2
Minor BPS
90
1.33
0.8
96.98
27.6

Associated Gene:

Gene:
VBP1
Ensembl Gene ID:
ENSAPLG00000014527
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015141
20665113 - 20670081
4969