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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20676106_20679712_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20676106 - 20679712
Intron Length:
3607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCAGC
5'SS Class:
major
3'SS Sequence:
CATGCTTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAC
U12 Branch Point Sequence:
TGTGACTCACGT
Flanking Amino Acid:
IWDTAGQERFRSITRAYYRN
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.5
42.9
Major BPS
59.5
0.24
1.2
63.3
35.6
Major PPT
78.4
0.64
0.9
69
41.5
Minor 5ss
34.8
-1.7
2.9
43.9
43.7
Minor BPS
41.8
-0.5
2.2
61.75
47.6

Associated Gene:

Gene:
RAB39B
Ensembl Gene ID:
ENSAPLG00000014543
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047149
20674358 - 20680617
6260
ENSAPLT00000030619
20675679 - 20683106
7428
ENSAPLT00000015167
20675679 - 20684521
8843