About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20679904_20684500_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20679904 - 20684500
Intron Length:
4597

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGTGGAGA
5'SS Class:
major
3'SS Sequence:
CTGGCTCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCAGCAT
U12 Branch Point Sequence:
CTGGCTCTACCA
Flanking Amino Acid:
LSSGERQFRLIVIGDST
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
64.3
40.1
Major BPS
43.3
-0.4
1.5
47.7
45.7
Major PPT
66.9
0.38
1
58.9
41.8
Minor 5ss
21.9
-3.2
3.7
30.4
43
Minor BPS
44.8
-0.4
2
54.9
44.5

Associated Gene:

Gene:
RAB39B
Ensembl Gene ID:
ENSAPLG00000014543
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015167
20675679 - 20684521
8843