Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20691000_20692144_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20691000 - 20692144

Intron Length:

1145

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTCAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTACAT

U12 Branch Point Sequence:

TACTCCATACTA

Flanking Amino Acid:

RPSGVDSFVKCYVLPDTSKK

Intron Amino Acid Position:

817

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

34.9

Major BPS

61.4

0.28

1.1

36.5

Major PPT

73.2

0.52

74.3

28.2

Minor 5ss

34.1

-1.8

3.1

41.9

38.9

Minor BPS

51.9

0.05

1.9

65.24

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027441

20688075 - 20710875

22801

ENSAPLT00000025270

20688858 - 20710875

22018

ENSAPLT00000047742

20688858 - 20710875

22018

ENSAPLT00000015198

20688858 - 20710875

22018

ENSAPLT00000046583

20688858 - 20723054

34197

ENSAPLT00000046289

20688075 - 20754675

66601