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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20692907_20693508_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20692907 - 20693508
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAC
U12 Branch Point Sequence:
TCAGTCATAACT
Flanking Amino Acid:
VNPIYNEVLRSLSAVNGVDH
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
65.3
0.38
1.1
66.2
36.5
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
56.8
0.29
1.8
73.1
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025270
20688858 - 20710875
22018