About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20693336_20693508_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20693336 - 20693508
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
GCGACCTGACTT
Flanking Amino Acid:
VNPIYNEVLRYKIEKMVLLI
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74.4
36
Major BPS
60.1
0.25
1
51
35.6
Major PPT
84.8
0.78
0.7
78.2
30.7
Minor 5ss
33.3
-1.9
2.8
33.8
41.1
Minor BPS
46.6
-0.1
1.8
58.07
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046289
20688075 - 20754675
66601
ENSAPLT00000027441
20688075 - 20710875
22801
ENSAPLT00000015198
20688858 - 20710875
22018
ENSAPLT00000047742
20688858 - 20710875
22018
ENSAPLT00000046583
20688858 - 20723054
34197