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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20693612_20694483_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20693612 - 20694483
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGATGAT
U12 Branch Point Sequence:
GTATCCAGATGA
Flanking Amino Acid:
VVDEKKGRSDPYVKTYLLPD
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.3
68.7
38.1
Major BPS
60.7
0.27
1.2
51.5
43.9
Major PPT
91.4
0.93
0.6
84.4
30.5
Minor 5ss
30.8
-2.2
3.3
44.6
43.6
Minor BPS
42.3
-0.5
2.1
55.28
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025270
20688858 - 20710875
22018
ENSAPLT00000047742
20688858 - 20710875
22018
ENSAPLT00000015198
20688858 - 20710875
22018
ENSAPLT00000046583
20688858 - 20723054
34197
ENSAPLT00000046289
20688075 - 20754675
66601
ENSAPLT00000027441
20688075 - 20710875
22801