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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20694654_20696564_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20694654 - 20696564
Intron Length:
1911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCACCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
TTGTTCTCCACC
Flanking Amino Acid:
HSSDMASVSSVSGSVLSVYS
Intron Amino Acid Position:
613

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
82.1
37.7
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
66.3
0.37
1
61.2
34.7
Minor 5ss
40.8
-1
3.2
60.3
44.3
Minor BPS
53.9
0.1
2
69.88
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027441
20688075 - 20710875
22801
ENSAPLT00000025270
20688858 - 20710875
22018
ENSAPLT00000015198
20688858 - 20710875
22018
ENSAPLT00000046583
20688858 - 20723054
34197
ENSAPLT00000046289
20688075 - 20754675
66601