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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20696667_20697061_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20696667 - 20697061
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTCTGAGCA
Flanking Amino Acid:
SRSSPLLLSETESDTASEIS
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.6
39.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
73.9
0.54
1
71
39.1
Minor 5ss
35.9
-1.6
3.3
46.1
49.1
Minor BPS
61.4
0.35
1.7
74.61
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015198
20688858 - 20710875
22018
ENSAPLT00000046583
20688858 - 20723054
34197
ENSAPLT00000046289
20688075 - 20754675
66601
ENSAPLT00000027441
20688075 - 20710875
22801
ENSAPLT00000025270
20688858 - 20710875
22018