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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20697154_20698823_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20697154 - 20698823
Intron Length:
1670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTGTACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTGTACTTACAG
Flanking Amino Acid:
SMVNIYTTTETYNKPHLIPH
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
71.2
34.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84
0.77
0.8
77.4
36
Minor 5ss
31.9
-2.1
2.7
33.2
35.4
Minor BPS
50.3
-0.1
2
61.61
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046583
20688858 - 20723054
34197
ENSAPLT00000046289
20688075 - 20754675
66601
ENSAPLT00000027441
20688075 - 20710875
22801
ENSAPLT00000025270
20688858 - 20710875
22018
ENSAPLT00000047742
20688858 - 20710875
22018