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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20697154_20700208_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20697154 - 20700208
Intron Length:
3055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAAGG
5'SS Class:
major
3'SS Sequence:
TTTGTACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTGTACTTACAG
Flanking Amino Acid:
VQGTDSAVYSAYNKPHLIPH
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
57.5
47.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84
0.77
0.8
77.4
36
Minor 5ss
37.3
-1.4
3.1
49.6
46.3
Minor BPS
50.3
-0.1
2
61.61
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015198
20688858 - 20710875
22018