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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20700331_20700429_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20700331 - 20700429
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGCAAA
5'SS Class:
major
3'SS Sequence:
GTACTCATGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTACTCATGACA
Flanking Amino Acid:
ADKFIVAEKRNMEINGEPAE
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69.6
36.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
63.7
0.31
1.1
58.2
41.8
Minor 5ss
46.5
-0.4
2.6
56.9
42.1
Minor BPS
50.4
0.01
1.6
62.4
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027441
20688075 - 20710875
22801