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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20708660_20710314_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20708660 - 20710314
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CGTTGGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
ATCTTCTTAGTG
Flanking Amino Acid:
ELKKKDGDRIRRIQGSIKDE
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
73.3
0.53
1
65.3
41.1
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
58
0.11
1.6
60.91
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027441
20688075 - 20710875
22801
ENSAPLT00000025270
20688858 - 20710875
22018
ENSAPLT00000047742
20688858 - 20710875
22018
ENSAPLT00000015198
20688858 - 20710875
22018
ENSAPLT00000046583
20688858 - 20723054
34197
ENSAPLT00000046289
20688075 - 20754675
66601