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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20710876_20740869_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20710876 - 20740869
Intron Length:
29994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGCCT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATGAACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.5
42.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
89.6
0.89
0.7
84.7
30.1
Minor 5ss
39.5
-1.2
3.3
57.5
46.6
Minor BPS
62.2
0.24
1.8
71.08
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014564
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046289
20688075 - 20754675
66601