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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20735423_20747698_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20735423 - 20747698
Intron Length:
12276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
TTTTCTACCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAAAC
Flanking Amino Acid:
YSAKESQLHTIYYYSGGQSY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.3
69
38.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.5
0.73
0.8
77.5
29.7
Minor 5ss
41.5
-0.9
3.2
60.9
43.8
Minor BPS
63.1
0.39
1.5
72.28
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014694
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015322
20732311 - 20754722
22412