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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20747898_20751389_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20747898 - 20751389
Intron Length:
3492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
SQKSVIVNVLVKPSKPFCKI
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014694
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045469
20732311 - 20754722
22412
ENSAPLT00000015322
20732311 - 20754722
22412