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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_20760312_20761318_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20760312 - 20761318
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
GTTCTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATTG
Flanking Amino Acid:
NIQDSEGNTPLHLACDEERV
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.7
35.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.3
0.75
0.8
77.7
35.3
Minor 5ss
37.3
-1.4
3.4
59
45.5
Minor BPS
62.1
0.24
1.7
66.34
42.3

Associated Gene:

Gene:
PSMD10
Ensembl Gene ID:
ENSAPLG00000014713
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015333
20760158 - 20765989
5832