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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2231954_2232951_F

Intron Information:

Intron Rank:
137591
Intron Class:
major
Intron Phase:
Intron Coordinates:
2231954 - 2232951
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAATACAT
5'SS Class:
major
3'SS Sequence:
GACTCTTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCTTCTCAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
66.5
38.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
75.7
0.58
0.8
73.3
36.8
Minor 5ss
36.1
-1.6
3.3
53.1
43.8
Minor BPS
57.5
0.31
2
80.09
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024092
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025584
2231204 - 2234279
3076