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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2233086_2234147_F

Intron Information:

Intron Rank:
137592
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2233086 - 2234147
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGAAATTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTTCTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
59.7
0.22
1.2
57.8
41.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
68.6
0.66
1.5
84.64
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024092
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025584
2231204 - 2234279
3076