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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2239579_2239718_F

Intron Information:

Intron Rank:
141615
Intron Class:
major
Intron Phase:
Intron Coordinates:
2239579 - 2239718
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGGTCAGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.7
0.71
0.8
73
37
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
51.6
0.05
2.3
69.37
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026266
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034593
2235559 - 2240640
5082
ENSAPLT00000020012
2235559 - 2240588
5030