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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2253216_2254920_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2253216 - 2254920
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAT
5'SS Class:
major
3'SS Sequence:
TCCCTTTCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTTTAACA
Flanking Amino Acid:
LGVLLYTMLAGYTPFANGPN
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
76.8
33.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.1
0.5
0.8
69.2
30
Minor 5ss
29.3
-2.4
2.9
32.2
42.1
Minor BPS
87.6
1.18
0.8
89.77
25.2

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008565
2249652 - 2285655
36004
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459