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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2255568_2255992_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2255568 - 2255992
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGAT
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAGATTTTAACA
Flanking Amino Acid:
KTVDYLHCQGVVHRDLKPSN
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
71.2
34.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.4
0.66
1
81.2
28.3
Minor 5ss
30.2
-2.3
3.2
36.5
41.7
Minor BPS
65.7
0.49
1.3
68.62
37.8

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004