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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2256152_2256817_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2256152 - 2256817
Intron Length:
666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTACC
5'SS Class:
major
3'SS Sequence:
TAAACTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GCTTGTTAAACT
Flanking Amino Acid:
QHPNIITLKDVYDDGRFIYL
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.2
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
74.1
0.54
0.9
70.3
40.6
Minor 5ss
45.5
-0.5
2.4
59.9
37.5
Minor BPS
51.4
0.12
2.1
71.8
45.5

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004