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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2256908_2257411_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2256908 - 2257411
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
CTGTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTGCAAAATT
Flanking Amino Acid:
IATNMEFAVKIIDKSKRDPS
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.1
0.72
0.9
76.5
37.2
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
47.6
-0.1
2.3
73.42
43.7

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004