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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2261017_2261461_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2261017 - 2261461
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAATT
Flanking Amino Acid:
LFKRNPSNRLGAGSDGVEEI
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
33.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.3
0.86
0.8
88.2
29.1
Minor 5ss
33.6
-1.9
3
41.1
45.4
Minor BPS
58.3
0.34
1.6
72.92
39.2

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004
ENSAPLT00000047907
2249652 - 2284932
35281