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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_2263642_2265231_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2263642 - 2265231
Intron Length:
1590

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTGTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTCTTGTAAT
Flanking Amino Acid:
LDEAGHIKLTDFGLSKESVD
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
71.2
0.48
1
65.2
41.2
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
51.7
0.13
1.9
75.41
40.9

Associated Gene:

Gene:
RPS6KA6
Ensembl Gene ID:
ENSAPLG00000008167
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047907
2249652 - 2284932
35281
ENSAPLT00000026638
2249652 - 2289110
39459
ENSAPLT00000008565
2249652 - 2285655
36004